PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0633
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 433aa    MW: 47614.7 Da    PI: 9.5201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0633genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-053052123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Gh_A04G0633 30 FICEICNKGFQRDQNLQLHRRGH 52
                 89*******************88 PP

2zf-C2H2130.00031107129123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Gh_A04G0633 107 WKCEKCSKKYAVQSDWKAHSKTC 129
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.02E-72952No hitNo description
Gene3DG3DSA:3.30.160.601.1E-52952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0223052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8453052IPR007087Zinc finger, C2H2
PfamPF121715.0E-53052IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035510072102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-495128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-7102127No hitNo description
SMARTSM00355140107127IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MADETDFKDM DPDAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  60
RNNKEPVKKK VYICPEKTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS  120
DWKAHSKTCG TREYKCDCGT LFSRKDSFIT HRAFCDALAE ESARFSSVAG AATNLNFRND  180
VVNLPIGFGG IPQFGSGFTQ DVSGMTVSGL PEMVQMASGN LFGSSSLNNF GTDSNPPLLP  240
LPQGLNEEGG SKGKLMESLS PLYSDTQNEQ SKPAAPMSAT ALLQKAAQMG STRSKPTSFF  300
GNSFCVRSST SSQRSASLRS TQNRNDQLQQ IYPNVKQQES YLMASSSVSM SAYAGLGTSN  360
NFDRLILQTG VKQNAPNQLK MHPGSNSIDQ SLTRDFLGMG NDQSARPFLP QELAKFVSIG  420
STMGLNQFSS SNH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443323.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-137IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A0D2V1730.0A0A0D2V173_G
STRINGVIT_08s0040g02100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-116C2H2-like zinc finger protein